Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs12271335 | chr11:105635007 | C/T | 0.000131 | 64 | 68.8 | 67.72 | 25.13 | KM Plot |
| KICH | rs12425281 | chr12:127751416 | G/C | 1.03E-6 | 62 | 62.83 | 75.97 | 16.9 | KM Plot |
| KICH | rs12525839 | chr6:148472621 | G/A | 1.4E-6 | 62 | 68.13 | 37.68 | 20.75 | KM Plot |
| KICH | rs12764858 | chr10:86615278 | T/G | 0.00011 | 63 | 64.03 | 99 | 24.17 | KM Plot |
| KICH | rs13007867 | chr2:40951554 | C/G | 8.43E-7 | 63 | 64.83 | 75.97 | 16.9 | KM Plot |
| KICH | rs1334371 | chr13:82100277 | T/C | 6.13E-7 | 64 | 64.83 | 53.87 | 16.9 | KM Plot |
| KICH | rs13389329 | chr2:54833187 | C/T | 4.33E-7 | 65 | 63.23 | 76.8 | 16.9 | KM Plot |
| KICH | rs137863996 | chr1:84204982 | G/A | 9.62E-7 | 64 | 65.47 | 62.77 | 20.75 | KM Plot |
| KICH | rs138016789 | chr3:134154479 | CTTTA/C | 2.22E-13 | 62 | 66.1 | 34.63 | 10.83 | KM Plot |
| KICH | rs138040262 | chr6:33501544 | AT/A | 4.78E-7 | 65 | 66.1 | 53 | 16.9 | KM Plot |
| KICH | rs140119808 | chr6:148480673 | A/T | 1.31E-6 | 63 | 67.47 | 37.68 | 20.75 | KM Plot |
| KICH | rs142714345 | chr6:33482717 | AAAAC/A | 6.21E-7 | 64 | 65.47 | 53 | 16.9 | KM Plot |
| KICH | rs143514156 | chr2:137084195 | G/A | 8.84E-7 | 64 | 65.47 | 64.87 | 20.75 | KM Plot |
| KICH | rs143811371 | chr2:171235914 | A/G | 1.13E-7 | 65 | 68.13 | 23.6 | 20.75 | KM Plot |
| KICH | rs1454402 | chr2:52883246 | C/G | 3.0E-8 | 65 | 19.67 | 37.37 | 67.47 | KM Plot |